DNA Profiling and Interrelationship among Soybean Cultivars using Random primers

Choudhury Partha Ray1, Pandey S.K.2


Research Articles | Published:

Print ISSN : 0970-4078.
Online ISSN : 2229-4473.
Website:www.vegetosindia.org
Pub Email: contact@vegetosindia.org
Doi: 10.5958/2229-4473.2017.00065.9
First Page: 216
Last Page: 219
Views: 1271


Keywords: DNA Profiling, Soybean, Random Primers, Polymorphism.


Abstract


DNA being the only basis in effecting genetic differences between distinct organisms, fingerprinting of DNA offers appropriate method of biological individualization through establishing genetic purityvariety identification in the IPR regime. RAPD primer directs amplification of several discrete loci in the genome, making the assay useful for efficient screening of nucleotide sequence polymorphism between individuals. As primers modified by a single nucleotide produce different banding profiles, RAPD technique can generate polymorphisms between very closely related genotypes. Nineteen promising cultivars of soybean grown across India in diverse agro-climatic zones having morphological diversity and varied parentage were selected for molecular polymorphism studies. In the present study, 10 RAPD primers led to amplification of 56 fragments ranging from about 3,300 bp (by OPT 1) to 500 bp (OPP 15), out of which 50 (89.29%) bands were found to be polymorphic. The level of polymorphism ranged from 50% (by OPP 19) to 100% (by OPP 6, 8, 12, 15 and OPT 13). On an average 5.6 bands per primer were obtained and all the primers produced polymorphic banding pattern indicating proper selection and usefulness of the selected primers. Soybean genotype used in the present study have got a wide genetic base and identification of genetic differences among those cultivars by DNA polymorphism could be very important for chalking out further breeding strategies.


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References



Acknowledgements



Author Information


Choudhury Partha Ray1 Pandey S.K.2
ICAR-Indian Institute of Seed Science, Mau, UP

1ICAR-Crop Science Division, ICAR, Krishi Bhavan, New Delhi

2Boston College for Professional Studies, Jiwaji University, Gwalior, MP

3ICAR-NRC on Plant Biotechnology, LBS Centre, Pusa, New Delhi-110012

4ICAR-CRIJAF, Barrackpore, West Bangal

*Corresponding author: Asit B. Mandal, ICAR-Indian Institute of Seed Science, Mau, UP, India, Email: