*Article not assigned to an issue yet
Hachef Afifa, Bourguiba Hedia, Zarkouna Rahma, Cherif Emira, Zehdi-Azouzi Salwa
Keywords: Date palm, Pollination, Male progenitors, Morphological variability, ISSR markers, Joint analysis
The date palm (Phoenix dactylifera L.) is a dioecious plant, with female trees producing dates and male trees, commonly referred to as “Dhokar”, providing pollen. Pollination plays a crucial role in date production, and its success is closely linked to pollen quality and metaxenic effects. Given this importance, selecting male genotypes with superior agronomic traits is essential. However, limited knowledge of male germplasm poses a challenge for breeding programs. Therefore, evaluating the extent of genetic diversity among male date palm is a key prerequisite. The present study investigated both morphological variability and molecular diversity of a set of 30 male genotypes with varying flowering times, all originating from Tunisia. Significant morphological variability was observed across both vegetative and reproductive traits. The principal component analysis based on quantitative traits highlighted morphological similarities among the three flowering groups: Early, full-season and late flowering. In addition, ISSR analysis confirmed the high level of genetic polymorphism, with a mean of polymorphic information content (PIC) of 0.841. The molecular dendrogram showed genotype clustering that was independent of flowering group affiliation. Combined morphological and molecular analyses demonstrated substantial genetic variation within the evaluated male genotypes. These findings contribute valuable insights into the biodiversity of male date palms and support the conservation, utilization and genetic improvement of this underexplored germplasm.
Ahmed AA, Qadir SA, Tahir NAR (2022) CDDP and ISSR markers-assisted diversity and structure analysis in Iraqi Mazu (Quercus infectoria Oliv.) accessions. All Life 15(1):247–261
Ahmed MVOM, Bouna ZEO, Lemine FMM, Djeh TKO, Mokhtar T, Salem AOM (2011) Use of multivariate analysis to assess phenotypic diversity of date palm (Phoenix dactylifera L.) cultivars. Sci Hortic 127(3):367–371
Al-Najm A, Brauer S, Trethowan R, Merchant A, Ahmad N (2021) Optimization of in vitro pollen germination and viability testing of some Australian selections of date palm (Phoenix dactylifera L.) and their xenic and metaxenic effects on the tissue culture–derived female cultivar “Barhee.” In Vitro Cell Dev Biol Plant 57:771–785
Arabnezhad H, Bahar M, Mohammadi HR, Latifian M (2012) Development, characterization and use of microsatellite markers for germplasm analysis in date palm (Phoenix dactylifera L.). Sci Hortic 134:50–156
Arogundade O, Matthew JO, Ifeoluwa O, Akin-Idowu PE, Akinyemi SOS (2022) Phenotypic and molecular characterization of mango cultivars in Southwest Nigeria. Int J Fruit Sci 22(1):151–159
Bedjaoui H, Benbouza H (2020) Assessment of phenotypic diversity of local Algerian date palm (Phoenix dactylifera L.) cultivars. J Saudi Soc Agric Sci 19(1):65–75
Bodian A, Nachtigall M, Frese L, Aziz Elhoumaizi M, Hasnaoui A (2014) Genetic diversity analysis of date palm (Phoenix dactylifera L.) cultivars from morocco using SSR markers. J Biodivers Biopros Dev 1:126. https://doi.org/10.4172/ijbbd
Bourguiba H, Hachef A, Saffar W, Chabrillange N, Aberlenc F, Cherif E, Zehdi-Azouzi S (2024) Male diversity matters: genetic structuring of insular male date palm (Phoenix dactylifera L.) revealed valuable breeding and conservation resources. J Hortic Sci Biotechnol 99(2):212–222
Chaturvedi T, Gupta AK, Shanker K, Dubey BK, Tiwari G (2022) Maximizing genetic gain through unlocking genetic variation in different ecotypes of kalmegh (Andrographis paniculata (Burm. f.) Nee). Front Plant Sci 13:1042222
Chen H, Guo A, Wang J, Gao J, Zhang S, Zheng J, Huang X, Xi J, Yi K (2020) Evaluation of genetic diversity within asparagus germplasm based on morphological traits and ISSR markers. Physiol Mol Biol Plants 26(2):305–315
Chikh-Rouhou H, Mezghani N, Mnasri S, Mezghani N, Garcés-Claver A (2021) Assessing the genetic diversity and population structure of a Tunisian melon (Cucumis melo L.) collection using phenotypic traits and SSR molecular markers. Agronomy 11(6):1121
Chtourou-Ghorbel N, Guenni K, Bedoui M, Chadded H, Sai-Kachout S, Trifi-Farah N (2024) Genetic and phenological diversity of Tunisian natural populations of Dactylis glomerata L. Genet Resour Crop Evol. https://doi.org/10.1007/s10722-024-01869-9
Cornea-Cipcigan M, Pamfil D, Sisea CR, Margaoan R (2023) Characterization of Cyclamen genotypes using morphological descriptors and DNA molecular markers in a multivariate analysis. Front Plant Sci 14:1100099
da Silva MJ, Pastina MM, de Souza VF, Schaffert RE, Carneiro PCS, Noda RW, de Souza JE, Damasceno CMB, Parrella RADC (2017) Phenotypic and molecular characterization of sweet sorghum accessions for bioenergy production. PLoS ONE 12(8):e0183504
Devi A, Iqbal T, Wani IA, Sharma G, Verma S, Noureldeen A, Darwish H (2022) Assessment of variability among morphological and molecular characters in wild populations of mint [Mentha longifolia (L.) L.] germplasm. Saudi J Biol Sci 29(5):3528–3538
El Kadri NE, Mimoun MB, Hormaza JI (2019) Genetic diversity of Tunisian male date palm (Phoenix dactylifera L.) genotypes using morphological descriptors and molecular markers. Sci Hortic 253:24–34
Elshibli S, Korpelainen H (2008) Microsatellite markers reveal high genetic diversity in date palm (Phoenix dactylifera L.) germplasm from Sudan. Genetica 134(2):251–260
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14(8):2611–2620
FAOSTAT (2023) Agro-statistics database. Food and agriculture organization of the United Nations. https://www.fao.org/statistics/fr#
Hachef A, Bourguiba H, Cherif E, Ivorra S, Terral JF, Zehdi-Azouzi S (2023) Agro-morphological traits assessment of Tunisian male date palms (Phœnix dactylifera L.) for preservation and sustainable utilization of local germplasm. Saudi J Biol Sci 30(3):103574
Hwang TY, Gwak BS, Sung J, Kim HS (2020) Genetic diversity patterns and discrimination of 172 Korean soybean (Glycine max (L.) Merrill) varieties based on SSR analysis. Agriculture 10(3):77
Ibrahimi M, Brhadda N, Ziri R, Fokar M, Amghar I, Gaboun F, Habach A, Meziani R, Elfadile J, Abelwahd R, Diria G (2024) Molecular identification of genetic diversity and population structure in moroccan male date palm (Phoenix dactylifera L.) using inter-simple sequence repeat, direct amplification of minisatellite DNA, and simple sequence repeat markers. Horticulturae 10(5):508
IPGRI (2005) Les descripteurs du palmier dattier (Phoenix dactylifera L.). IPGRI, Rome
Karakaya O, Yaman M, Balta F, Yilmaz M, Balta MF (2023) Assessment of genetic diversity revealed by morphological traits and ISSR markers in hazelnut germplasm (Corylus avellana L.) from Eastern Black Sea Region, Turkey. Genet Resour Crop Evol 70(2):525–537
Kumar R, Varghese S, Jayaswal D, Jayaswall K, Ydav K, Mishira G, Vyas RP, Singh HC, Prakash HG, Singh AN, Kumar S (2023) Agro-morphological and genetic variability analysis in oat germplasms with special emphasis on food and feed. PLoS ONE 18(2):e0280450
Malek N, Aci MM, Khamassi K, Lupini A, Rouissi M, Hanifi-Mekliche L (2021) Agro-morphological and molecular variability among Algerian faba bean (Vicia faba L.) accessions. Agronomy 11(8):1456
Marzario S, Sica R, Taranto F, Fania F, Esposito S, de vita P, Gioia T, Logozzo G (2023) Phenotypic evolution in durum wheat (Triticum durum Desf.) based on SNPs, morphological traits, UPOV descriptors and kernel-related traits. Front Plant Sci 14:1206560
Moussouni S, Pintaud JC, Vigouroux Y, Bouguedoura N (2017) Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae): heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity. PLoS ONE 12(4):e0175232
Naqvi SA, Khan IA, Pintaud JC, Jaskani MJ, Asif Ali AA (2015) Morphological characterization of Pakistani date palm (Phoenix dactylifera L.) genotypes. Pak J Agric Sci 52(3):645–650
Nicolás-Almansa M, Ruiz D, Salazar JA, Guevara A, Cos J, Martínez-Gómez P, Rubio M (2023) Phenotypic and molecular characterization of new interspecific Japanese plum× apricot hybrids (plumcots). Sci Hortic 318:112131
Nixon RW (1928) The direct effect of pollen on the fruit of the date palm. US Government Printing Office.
Nkhata W, Shimelis H, Melis R, Chirwa R, Mzengeza T, Mathew I, Shayanowako A (2020) Population structure and genetic diversity analyses of common bean germplasm collections of East and Southern Africa using morphological traits and high-density SNP markers. PLoS ONE 15(12):e0243238
ONAGRI (2022) Observatoire National de l’agriculture. http://www.onagri.nat.tn/
Parashuram S, Singh NV, Gaikwad NN, Corrado G, Roopa Sowjanya P, Basile B, Devaraja NS, Goudappa P, Kumar P, Chandra R, Babu KD, Sigh A, Marathe RA (2022) Morphological, biochemical, and molecular diversity of an indian ex situ collection of pomegranate (Punica granatum L.). Plants 11(24):3518
Pipan B, Neji M, Meglič V, Sinkovič L (2024) Genetic diversity of kale (Brassica oleracea L. var acephala) using agro-morphological and simple sequence repeat (SSR) markers. Genet Resour Crop Evol 71(3):1221–1239
Prevost A, Wilkinson MJ (1999) A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor Appl Genet 98(1):107–112
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155(2):945–959
Racchi ML, Bove A, Turchi A, Bashir G, Battaglia M, Camussi A (2014) Genetic characterization of Libyan date palm resources by microsatellite markers. 3 Biotech 4(1):21–32
Raji R, Siril EA (2021) Genetic diversity analysis of promising Ceylon olive (Elaeocarpus serratus L.) genotypes using morphological traits and ISSR markers. Curr Plant Biol 26:100201
Rakshita KN, Singh S, Verma VK, Sharma BB, Saini N, Iquebal MA, Sharma A, Dey SS, Behera TK (2021) Agro-morphological and molecular diversity in different maturity groups of Indian cauliflower (Brassica oleracea var botrytis L.). J PloS one 16(12):e0260246
Rhouma A (1994) Le palmier dattier en Tunisie: le patrimoine génétique. Vol. 1. Arabesques, Tunis, Tunisie
Rhouma A (2005) Le palmier dattier en Tunisie: Le patrimoine génétique. Vol. 2. IPGRI, Rome, Italy.
Roldán-Ruiz I, Dendauw J, Van Bockstaele E, Depicker A, De Loose M (2000) AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.). Mol Breed 6(2):125–134
Sarif HM, Rafii MY, Ramli A, Oladosu Y, Musa HM, Rahim HA, Zuki ZM, Chukwu SC (2020) Genetic diversity and variability among pigmented rice germplasm using molecular marker and morphological traits. Biotechnol Biotechnol Equip 34(1):747–762
Savoia MA, Del Faro L, Turco A, Fanelli V, Venerito P, Montemurro C, Sabetta W (2023) Biodiversity evaluation and preservation of Italian stone fruit germplasm (peach and apricot) in Southern Italy. Plants 12(6):1279
Savoia MA, Del Faro L, Turco A, Fanelli V, Venerito P, Montemurro C, Sabetta W (2022) The relevance of discovering and recovering the biodiversity of Apulian almond germplasm by means of molecular and phenotypic markers. Plants 11(4):574
Seka D, Kouago BA, Bonny BS (2023) Assessment of the variability of the morphological traits and differentiation of Cucurbita moschata in Cote d’Ivoire. Sci Rep 13(1):3689
Shah RA, Bakshi P, Sharma N, Jasrotia A, Itoo H, Gupta R, Singh A (2021) Diversity assessment and selection of superior Persian walnut (Juglans regia L.) trees of seedling origin from North-Western Himalayan region. Resour Environ Sustain 3:100015
Shahsavar AR, Shahhosseini A (2022) The metaxenia effects of different pollen grains on secondary metabolites enzymes and sugars of ‘Piarom’ date palm fruit. Sci Rep 12(1):10058
Smith JSC, Chin ECL, Shu H, Smith OS, Wall SJ, Senior ML, Mitchell SE, Kresovich S, Ziegle J (1997) An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): comparisons with data from RFLPS and pedigree. Theor Appl Genet 95:163–173
Tajibayev D, Mukin K, Babkenov A, Chudinov V, Dababat AA, Jiyenbayeva K, Kenenbayev S, Savin T, Shamanin V, Tagayev K, Rsymbetov A, Yessimbekova M, Yusov V, Zhylkybaev R, Morgounov A, Altaf MT, Nadeem MA, Baloch FS (2023) Exploring the agronomic performance and molecular characterization of diverse spring durum wheat germplasm in Kazakhstan. Agronomy 13(7):1955
Trifi M, Rhouma A, Marrakchi M (2000) Phylogenetic relationships in Tunisian date-palm (Phoenix dactylifera L.) germplasm collection using DNA amplification fingerprinting. Agronomie 20(6):665–671
Vaishnav K (2023) Estimation of genetic diversity and population genetic structure in Gymnema sylvestre (Retz.) R. Br. ex Schult. populations using DAMD and ISSR markers. J Genet Eng Biotechnol 21(1):42
Więcław H, Szenejko M, Kull T, Sotek Z, Rębacz-Maron E, Koopman J (2021) Morphological variability and genetic diversity in Carex buxbaumii and Carex hartmaniorum (Cyperaceae) populations. PeerJ 9:e11372
Wu W, Chen F, Yeh K, Chen J (2019) ISSR analysis of genetic diversity and structure of plum varieties cultivated in Southern China. Biology 8(1):2
Zafeiriou I, Sakellariou M, Mylona PV (2023) Seed phenotyping and genetic diversity assessment of cowpea (V. unguiculata) germplasm collection. Agronomy 13(1):274
Zaman F, Zhang E, Xia L, Deng X, Ilyas M, Ali A, Guo F, Wang P, Wang M, Wang Y, Ni D, Zhao H (2023) Natural variation of main biochemical components, morphological and yield traits among a panel of 87 tea [Camellia sinensis (L.) O. Kuntze] cultivars. Hortic Plant J 9(3):563–576
Zango O, Cherif E, Chabrillange N, Zehdi-Azouzi S, Gros-Balthazard M, Naqvi SA, Lemansour A, Rey H, Bakasso Y, Aberlenc F (2017) Genetic diversity of Southeastern Nigerien date palms reveals a secondary structure within Western populations. Tree Genet Genomes 13(4):75
Zehdi S, Cherif E, Rhouma S, Santoni S, Hannachi AS, Pintaud JC (2012) Molecular polymorphism and genetic relationships in date palm (Phoenix dactylifera L.): the utility of nuclear microsatellite markers. Sci Hortic 148:255–263
Zehdi S, Sakka H, Rhouma A, Salem AOM, Trifi M (2004) Analysis of Tunisian date palm germplasm using simple sequence repeat primers. Afr J Biotechnol 3(4):215–219
Laboratoire de Génétique Moléculaire, Immunologie et Biotechnologie (LR99ES12), Faculté des Sciences de Tunis (FST), Université de Tunis El Manar (UTM), El Manar, Tunis, Tunisia