The Pearson’s χ2 test is feasible for plant biotechnology experiments involving quantitative data

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Short Communications | Published:

E-ISSN: 2229-4473.
Website: www.vegetosindia.org
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DOI: 10.1007/s42535-025-01548-9
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Keywords: Biostatistics, Cryo-conservation, Genetic transformation, Research methods, Salt stress


Abstract


The chi-square test (χ2) has long been used to analyze categorical data and, while not used extensively in biotechnology trials, it has found application in numerous studies investigating segregation analysis. This report considered whether this test can be used on quantitative data collected from biotechnology experiments to determine whether the inherent principles of the test would allow room for adaptation and application with numerical data. This was evaluated using data published in three diverse biotechnology experiments investigating the response of in vitro sugarcane plants to salt stress, the effect of genetic transformation on field performance of pineapple plants, and the effect of cryopreservation on neonotonia seeds. Overall, this work shows that the χ2 test is suitable for the analysis of quantitative (numerical) data.



References


Acosta Y, Santiago F, Escalante D, Mazorra C, Cejas I, Martínez-Montero ME, Escobar A, Sershen HE, Lorenzo JC, Fontes D (2020) Cryo-exposure of Neonotonia wightii Wigth & Am seeds enhances field performance of plants. Acta Physiol Plant 42:1–6. https://doi.org/10.1007/s11738-019-3010-y


Acosta Y, Pérez L, Escalante D, Mazorra-Calero C, Martínez-Melo J, Martínez-Montero ME, Fortes D, Hajari E, Lorenzo JC, Fontes D (2021) Exposure of Teramnus labialis (LF) Spreng seeds to liquid nitrogen does not affect nutritional status of field grown adult plants. Cryo Lett 42:106–110


Baskin CC, Baskin JM (2014) Seeds: ecology, biogeography, and evolution of dormancy and germination, 2nd edn. Academic Press, New York


Bertasello LET, Carmo-Sousa M, Prado Maluta NK, Rossini Pinto L, Spotti Lopes JR, Gonçalves MC (2021) Effect of sugarcane cultivars infected with sugarcane yellow leaf vírus (ScYLV) on feeding behavior and biological performance of Melanaphis sacchari (Hemiptera: Aphididae). Plants 10:1–22


Cardona LAS, Vargas-Cardona HD, Navarro González P, Cardenas Peña DA, Orozco Gutiérrez ÁÁ (2020) Classification of categorical data based on the chi-square dissimilarity and t-sne. Computation 8:1–15


d’Eeckenbrugge GC, Leal F (2003) Morphology, anatomy and taxonomy. In: Bartholomew DP, Paull RE, Rohrbach KG (eds) The pineapple: botany, production and uses. CAB International, Honolulu, pp 13–32


de Almeida CLP, dos Santos Bento C, Sudré CP, Pimenta S, Gonçalves LSA, Rodrigues R (2020) Genotype-ideotype distance index and multivariate analysis to select sources of anthracnose resistance in Capsicum spp. Eur J Plant Pathol 156:223–236


Du X, Li X (2023) A study of weathering of glass artifacts based on Spearman’s correlation coefficient and chi-square test. Highl Sci Eng Technol 69:602–607


Duke C, Park K, Ewing R (2020) Chi-square. Basic quantitative research methods for urban planners. Routledge, pp 133–149


Espinosa P, Lorenzo JC, Iglesias A, Yabor L, Menéndez E, Borroto J, Hernández L, Arencibia A (2002) Production of pineapple transgenic plants assisted by temporary immersion bioreactors. Plant Cell Rep 21:136–140


Gómez D, Hernández L, Valle B, Martínez J, Cid M, Escalona M, Hernández M, Yabor L, Beemster GTS, Tebbe CC, Papenbrock J, Lorenzo JC (2017) Salinity induces specific metabolic changes in sugarcane shoot explants in temporary immersion bioreactors. J Appl Biol Food Qual 90:354–358


Goual H, Yousof HM (2020) Validation of Burr XII inverse Rayleigh model via a modified chi-squared goodness-of-fit test. J Appl Stat 47:393–423


Gurr S, McPherson J, Bowles D (1992) Lignin and associated phenolic acids in cell walls. In: Wilkinson DL (ed) Molecular plant pathology. Oxford Press, Oxford, p pp 62


Heath R, Packer J (1968) Photoperoxidation in isolated chloroplast: I. kinetics and stoichiometry of fatty acid peroxidation. Arch Biochem Biophys 125:189–198


Hoagland RE (1990) Alternaria cassiae alters phenylpropanoid metabolism in Sicklepod (Casia obstusifolia). J Phytopathol 130:177–187


Ishak I, Fedora F (2024) Selection of rice aroma from crossing aromatic rice x T250. 7 mutant genotype using DNA marker. J Biol Div 25:2191–2197


Jiménez E, Pérez J, Gil V, Herrera J, García Y, Alonso E (1995) Sistema para la propagación de la caña de azúcar. In: Estrade M, Riego E, Limonta E, Tellez P, Fuente J (eds) Avances en biotecnología moderna. Elfos Scientiae, La Habana, Cuba, p 112


Johnson B (2002) Analysis of US EPA Method 8270D–semivolatile organic compounds by GC/MS. (environmental: advertising supplement). LC-GC North America 20:S18–S18


Kathimba F, Kimani P, Narla R, Kiriika L (2022) Analysis of tomato agronomic traits using generation mean. Afr Crop Sci J 30:441–453


Leal F, d’Eckenbrugge GC (2018) History, distribution and world production. In: Sanewski G, Bartholomew DP, Paull RE (eds) The pineapple: botany production and uses. CAB International, Wallingford, pp 1–10


Lichtenthaler HK (1987) Chlorophylls and carotenoids: pigments of photosynthetic biomembranes. Meth Enzymol 148:350–382


Linstrom PJ, Mallard WG (2017) NIST chemistry webbook, NIST Standard Reference Database Number 69. http://webbook.nist.gov/. Accessed 6 Jan 2017


Lohn AF, Trtikova M, Chapela I, Van den Berg J, Du Plessis H, Hilbeck A (2020) Transgene behavior in Zea mays L. crosses across different genetic backgrounds: segregation patterns, cry1Ab transgene expression, insecticidal protein concentration and bioactivity against insect pests. PLoS ONE 15:1–28


Lorenzo JC, González B, Escalona M, Teisson C, Espinosa P, Borroto C (1998) Sugarcane shoot formation in an improved temporary immersion system. Plant Cell Tiss Org Cult 54:197–200. https://doi.org/10.1023/A:1006168700556


Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol Plant 15:473–497. https://doi.org/10.1111/j.1399-3054.1962.tb08052.x


Neda B, Feyissa T, Dagne K, Assefa E (2021) The study of morphological characteristics and statistics of the phenotypes and correlation in faba bean (Vicia faba L.) germplasm. Plant Breed Biotechnol 9:139–163


Okoye K, Hosseini S (2024) Chi-squared (X2) statistical test in R. R programming: statistical data analysis in research. Springer, pp 211–223


Pérez-Bonachea L, Luján-Hidalgo MC, Daquinta M, Guevara-Hernández F, Garro G, Hajari E, Ruíz-Valdiviezo VM, Lorenzo JC, Yabor L (2023) Chemical composition of roots of transgenic pineapple plants. In Vitro Cell Dev Biol Plant 59:839–843


Porra R (2002) The chequered history of the development and use of simultaneous equations for the accurate determination of chlorophylls a and b. Photosynth Res 73:149–156


Py C, Lacoeuilhe JJ, Teisson C (1987) The pineapple: cultivation and uses. Maisonneuve & Larose, Paris


Rao NK, Hanson J, Dulloo ME, Ghosh K (2007) Manual para el Manejo de Semillas en Bancos de Germoplasma. Bioversity International, Rome


Razar RM, Qi P, Devos KM, Missaoui AM (2022) Genotyping-by-sequencing and QTL mapping of biomass yield in two switchgrass F1 populations (lowland x coastal and coastal x upland). Front Plant Sci 13:1–17


Rolke W, Gongora CG (2021) A chi-square goodness-of-fit test for continuous distributions against a known alternative. Comput Stat 36:1885–1900


Suhardjo S, Renaldo N, Sevendy T, Rusgowanto FH, Pramesti IGAA (2023) Chi-square and 2-way ANOVA for accounting students: analysis of natural gas sales volume by pipeline by customer type in Indonesia. Reflect Educ Pedagog Insig 1:34–39


Tezel Ö, Tiryaki BK, Özkul E, Kesemen O (2021) A new doodness-of-fit test: free chi-square (FCS). Gazi Univ J Sci 34:879–897


Turhan NS (2020) Karl Pearson’s chi-square tests. Educ Res Rev 16:575–580


Wesley-Smith J, Walters C, Pammenter N, Berjak P (2001) Interactions among water content, rapid (nonequilibrium) cooling to −196 °C, and survival of embryonic axes of Aesculus hippocastanum L. seeds. Cryobiology 42:196–206


Yousof HM, Aidi K, Hamedani G, Ibrahim M (2021) A new parametric lifetime distribution with modified chi-square type test for right censored validation, characterizations and different estimation methods. Pak J Stat Oper Res 17:399–425

 


Author Information


Department for Plant Breeding and Conservation of Genetic Resources, Bioplant Center, University of Ciego de Ávila Máximo Gómez Báez, Ciego de Ávila, Cuba